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Effector binding domain of tsar

Analyse Effector binding domain of tsar in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3N6T
Type: protein
Length: 205 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysr type regulator of tsambcd
UniProt: P94678
Ligands: SO4
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysr type regulator of tsambcd	protein	205	32% helix, 28% strand	P94678

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A
GOL · Glycerol · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	154	0.63	0.85	37	GOL, ACT

Compared structures

3N6T · Effector binding domain of TsaR · the same entry in another collection · chain A against A, TM-score 1.00
P94678 · AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator tsar (P94678) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P94678
Elsewhere: RCSB PDB 3N6T · PDBe 3N6T · UniProt P94678

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