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Crystal structure of the gerbc protein

Analyse Crystal structure of the gerbc protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3N54
Type: protein
Length: 311 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Spore germination protein B3
UniProt: P39571
Ligands: SO4, CL
Pockets: 3 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Spore germination protein B3	protein	311	32% helix, 35% strand	P39571

Ligands and binding sites

SO4 · Sulfate ion · ion · 9 copies · chains B
CL · Chloride ion · ion · 9 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	151	0.55	0.81	17	CL
2	100	0.39	0.76	16	empty
3	58	0.36	0.79	16	empty

Compared structures

3N54 · Crystal Structure of the GerBC protein · the same entry in another collection · chain B against B, TM-score 1.00
P39571 · AlphaFold monomer V2.0 prediction for spore germination protein B3 (P39571) · a predicted model of the same protein · chain B against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39571
Elsewhere: RCSB PDB 3N54 · PDBe 3N54 · UniProt P39571

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