Research workbench
Apo APH(2")-iva form III
Analyse Apo APH(2")-iva form III in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3N4V
- Type
- protein
- Length
- 596 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- APH(2'')-id
- UniProt
- O68183
- Pockets
- 6 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | APH(2'')-id | protein | 298 | 47% helix, 15% strand | O68183 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 985 | 0.77 | 0.79 | 76 | empty |
| 2 | 1059 | 0.76 | 0.78 | 81 | empty |
| 3 | 70 | 0.33 | 0.75 | 14 | empty |
| 4 | 96 | 0.30 | 0.72 | 18 | empty |
| 5 | 73 | 0.29 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 165 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3N4V · apo APH(2)-IVa form III" · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68183
- Elsewhere: RCSB PDB 3N4V · PDBe 3N4V · UniProt O68183
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