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Crystal structure of isoprene synthase from grey poplar leaves (populus X canescens)

Analyse Crystal structure of isoprene synthase from grey poplar leaves (populus X… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3N0F
Type: protein
Length: 1,062 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Isoprene synthase
EC: 4.2.3.27
UniProt: Q9AR86
Pockets: 16 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Isoprene synthase (EC 4.2.3.27)	protein	531	74% helix, 0% strand	Q9AR86

Pockets

16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	523	0.79	0.86	49	empty
2	486	0.78	0.86	40	empty
3	524	0.68	0.79	55	empty
4	534	0.68	0.78	53	empty
5	285	0.67	0.83	36	empty

Interfaces

1 interface between chains.

A–B · 365 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

3N0F · Crystal Structure of Isoprene Synthase from Grey Poplar Leaves (Populus x canescens) · the same entry in another collection · chain A against A, TM-score 1.00
Q9AR86 · AlphaFold monomer V2.0 prediction for isoprene synthase, chloroplastic (Q9AR86) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AR86
Elsewhere: RCSB PDB 3N0F · PDBe 3N0F · UniProt Q9AR86

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