Research workbench
Alternation of DNA and solvent layers in the a form of D(GGCGCC) obtained by ethanol crystallization
Analyse Alternation of DNA and solvent layers in the a form of D(GGCGCC) obtained by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1G00
- Type
- DNA
- Length
- 34 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*GP*CP*GP*CP*C)-3'
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | 5'-D(*GP*GP*CP*GP*CP*C)-3' | dna | 6 | — | — |
| E | 5'-D(*GP*GP*CP*GP*CP*C)-3' | dna | 5 | — | — |
| F | 5'-D(*GP*GP*CP*GP*CP*C)-3' | dna | 5 | — | — |
Interfaces
9 interfaces between chains.
- C–D · 302 Ų buried · 39 hydrogen bonds · nucleic-nucleic
- A–B · 298 Ų buried · 35 hydrogen bonds · nucleic-nucleic
- E–F · 245 Ų buried · 30 hydrogen bonds · nucleic-nucleic
- B–F · 116 Ų buried · 1 hydrogen bond · nucleic-nucleic
- A–D · 113 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Compared structures
- 1G00 · Alternation of DNA and solvent layers in the a form of D(GGCGCC) obtained by ethanol… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1G00 · PDBe 1G00
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