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The crystal structure of a conserved functionally unknown protein from vibrio parahaemolyticus rimd 2210633

Analyse The crystal structure of a conserved functionally unknown protein from vibrio… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3MUQ
Type: protein
Length: 466 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized conserved protein
UniProt: Q87PK2
Pockets: 4 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized conserved protein	protein	233	45% helix, 25% strand	Q87PK2

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.65	0.89	26	empty
2	146	0.60	0.84	26	empty
3	217	0.46	0.73	34	empty
4	79	0.32	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 1302 Å² buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 16 modified (engineered).

Compared structures

3MUQ · The crystal structure of a conserved functionally unknown protein from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87PK2
Elsewhere: RCSB PDB 3MUQ · PDBe 3MUQ · UniProt Q87PK2

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