Research workbench
Crystal structure of a putative nitrate transport protein (TVN0104) from thermoplasma volcanium at 1.35 a resolution
Analyse Crystal structure of a putative nitrate transport protein (TVN0104) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MST
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative nitrate transport protein
- UniProt
- Q97CJ8
- Ligands
- UNL, CL
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative nitrate transport protein | protein | 233 | 44% helix, 20% strand | Q97CJ8 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · chains A
- CL · Chloride ion · ion · 5 copies · chains A
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.70 | 0.98 | 17 | UNL, CL |
| 2 | 285 | 0.64 | 0.81 | 32 | ACT |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3MST · Crystal structure of a Putative nitrate transport protein (TVN0104) from THERMOPLASMA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97CJ8
- Elsewhere: RCSB PDB 3MST · PDBe 3MST · UniProt Q97CJ8
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