Research workbench
Crystal structure of a putative ubiquinone biosynthesis protein (NPUN02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
Analyse Crystal structure of a putative ubiquinone biosynthesis protein (NPUN02000094)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MSQ
- Type
- protein
- Length
- 828 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ubiquinone biosynthesis protein
- UniProt
- B2J5W7
- Pockets
- 8 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 68% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative ubiquinone biosynthesis protein | protein | 207 | 68% helix, 1% strand | B2J5W7 |
Pockets
8 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 860 | 0.78 | 0.81 | 89 | empty |
| 2 | 61 | 0.73 | 0.98 | 14 | empty |
| 3 | 62 | 0.73 | 0.98 | 13 | empty |
| 4 | 59 | 0.73 | 0.98 | 14 | empty |
| 5 | 50 | 0.68 | 0.96 | 14 | empty |
Interfaces
4 interfaces between chains.
- B–C · 512 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 359 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 288 Ų buried · 4 hydrogen bonds · protein-protein
- A–D · 270 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 28 modified (engineered).
Compared structures
- 3MSQ · Crystal structure of a Putative ubiqui biosynthesis protein (Npun02000094) from Nostoc… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2J5W7
- Elsewhere: RCSB PDB 3MSQ · PDBe 3MSQ · UniProt B2J5W7
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