Research workbench
Crystal structure of the gammadelta T cell costimulatory receptor junctional adhesion molecule-like protein, jaml
Analyse Crystal structure of the gammadelta T cell costimulatory receptor junctional… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MJ6
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Junctional adhesion molecule-like
- UniProt
- Q80UL9
- Ligands
- NAG, FUC, NA
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Junctional adhesion molecule-like | protein | 227 | 5% helix, 49% strand | Q80UL9 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- NA · Sodium ion · metal · chains A
- FMT · Formic acid · additive · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 133 | 0.53 | 0.81 | 23 | empty |
Modifications
Observed in the structure: 3 glycan, 2 disulfide (N-glycosylation, disulfide).
Compared structures
- 3MJ6 · Crystal structure of the gammadelta T cell costimulatory receptor Junctional Adhesion… · the same entry in another collection · chain A against A, TM-score 1.00
- Q80UL9 · AlphaFold monomer V2.0 prediction for junctional adhesion molecule- like (Q80UL9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80UL9
- Elsewhere: RCSB PDB 3MJ6 · PDBe 3MJ6 · UniProt Q80UL9
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