Research workbench
Crystal structure of the sensory box domain of the sensory-BOX/GGDEF protein SO_1695 from shewanella oneidensis, northeast structural genomics consortium target SOR288B
Analyse Crystal structure of the sensory box domain of the sensory-BOX/GGDEF protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MFX
- Type
- protein
- Length
- 339 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sensory BOX/GGDEF family protein
- UniProt
- Q8EGB0
- Pockets
- 5 · best druggability 0.58
Structure
x-ray diffraction · 3 distinct chains · 27% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensory BOX/GGDEF family protein | protein | 112 | 26% helix, 37% strand | Q8EGB0 |
| B | Sensory BOX/GGDEF family protein | protein | 115 | 29% helix, 36% strand | Q8EGB0 |
| C | Sensory BOX/GGDEF family protein | protein | 112 | 25% helix, 36% strand | Q8EGB0 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.58 | 0.87 | 17 | empty |
| 2 | 90 | 0.46 | 0.81 | 19 | empty |
| 3 | 77 | 0.37 | 0.77 | 15 | empty |
| 4 | 87 | 0.36 | 0.76 | 17 | empty |
| 5 | 57 | 0.31 | 0.76 | 11 | empty |
Interfaces
2 interfaces between chains.
- A–B · 1032 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 279 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3MFX · Crystal Structure of the sensory box domain of the sensory-box/GGDEF protein SO_1695 from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EGB0
- Elsewhere: RCSB PDB 3MFX · PDBe 3MFX · UniProt Q8EGB0
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