Research workbench
Crystal structure of the S-type pyocin domain of ECA1669 protein from erwinia carotovora, northeast structural genomics consortium target EWR82C
Analyse Crystal structure of the S-type pyocin domain of ECA1669 protein from erwinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MFB
- Type
- protein
- Length
- 600 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q6D6L3
- Pockets
- 4 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Uncharacterized protein | protein | 150 | 10% helix, 36% strand | Q6D6L3 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 876 | 0.70 | 0.75 | 75 | empty |
| 2 | 296 | 0.59 | 0.78 | 42 | empty |
| 3 | 122 | 0.42 | 0.76 | 20 | empty |
| 4 | 57 | 0.26 | 0.73 | 13 | empty |
Interfaces
4 interfaces between chains.
- B–C · 436 Ų buried · 4 hydrogen bonds · protein-protein
- A–D · 431 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 406 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 11 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 20 modified (engineered).
Compared structures
- 3MFB · Crystal Structure of the S-type Pyocin domain of ECA1669 protein from Erwinia carotovora… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6D6L3
- Elsewhere: RCSB PDB 3MFB · PDBe 3MFB · UniProt Q6D6L3
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