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Fusarium oxysporum trypsin at atomic resolution

Analyse Fusarium oxysporum trypsin at atomic resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1FY5
Type: protein
Length: 227 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trypsin; Gly-ala-lys
EC: 3.4.21.4
UniProt: P35049
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 9% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trypsin (EC 3.4.21.4)	protein	224	9% helix, 38% strand	P35049
B	Gly-ala-lys	protein	3	0% helix, 33% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 286 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1FY5 · Fusarium oxysporum trypsin at atomic resolution · the same entry in another collection · chain A against A, TM-score 1.00
P35049 · AlphaFold monomer V2.0 prediction for trypsin (P35049) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P35049
Elsewhere: RCSB PDB 1FY5 · PDBe 1FY5 · UniProt P35049

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