Research workbench
Crystal structure of the matrix protein 1 from influenza a virus (A/CALIFORNIA/04/2009 (H1N1))
Analyse Crystal structure of the matrix protein 1 from influenza a virus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MD2
- Type
- protein
- Length
- 568 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein 1
- UniProt
- C3W5Z1
- Pockets
- 2 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Matrix protein 1 | protein | 142 | 71% helix, 0% strand | C3W5Z1 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.29 | 0.73 | 17 | empty |
| 2 | 50 | 0.23 | 0.72 | 15 | empty |
Interfaces
3 interfaces between chains.
- A–D · 763 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 759 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 130 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3MD2 · Crystal structure of the matrix protein 1 from influenza A virus (A/California/04/2009… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3W5Z1
- Elsewhere: RCSB PDB 3MD2 · PDBe 3MD2 · UniProt C3W5Z1
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