Research workbench

Crystal structure of the second rrm domain of yeast POLY(U)-binding protein (PUB1)

Analyse Crystal structure of the second rrm domain of yeast POLY(U)-binding protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3MD1
Type: protein
Length: 162 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
UniProt: P32588

Structure

x-ray diffraction · 2 distinct chains · 23% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1	protein	83	23% helix, 37% strand	P32588
B	Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1	protein	79	24% helix, 39% strand	P32588

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 527 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

3MD1 · Crystal Structure of the Second RRM Domain of Yeast Poly(U)-Binding Protein (Pub1) · the same entry in another collection · chain A against A, TM-score 1.00
P32588 · AlphaFold monomer V2.0 prediction for nuclear and cytoplasmic polyadenylated RNA-binding… · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32588
Elsewhere: RCSB PDB 3MD1 · PDBe 3MD1 · UniProt P32588

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.