Research workbench
Crystal structure of susd superfamily protein (BT_2365) from bacteroides thetaiotaomicron vpi-5482 at 1.49 a resolution
Analyse Crystal structure of susd superfamily protein (BT_2365) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MCX
- Type
- protein
- Length
- 459 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd superfamily protein
- UniProt
- Q8A577
- Ligands
- ZN
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd superfamily protein | protein | 459 | 47% helix, 5% strand | Q8A577 |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains A
- GOL · Glycerol · additive · 5 copies · chains A
- ACT · Acetate ion · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.70 | 0.97 | 20 | empty |
| 2 | 102 | 0.40 | 0.77 | 21 | GOL |
| 3 | 98 | 0.37 | 0.75 | 17 | empty |
| 4 | 61 | 0.34 | 0.77 | 18 | empty |
| 5 | 62 | 0.34 | 0.77 | 12 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3MCX · Crystal structure of SusD superfamily protein (BT_2365) from BACTEROIDES THETAIOTAOMICRON… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A577
- Elsewhere: RCSB PDB 3MCX · PDBe 3MCX · UniProt Q8A577
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