Research workbench
Crystal structure of autophagy-related protein ATG8 from the silkworm bombyx mori
Analyse Crystal structure of autophagy-related protein ATG8 from the silkworm bombyx… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M95
- Type
- protein
- Length
- 231 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autophagy related protein ATG8
- UniProt
- Q2F5R5
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autophagy related protein ATG8 | protein | 115 | 33% helix, 23% strand | Q2F5R5 |
| B | Autophagy related protein ATG8 | protein | 116 | 32% helix, 22% strand | Q2F5R5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.64 | 0.87 | 29 | empty |
| 2 | 141 | 0.42 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 570 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3M95 · Crystal structure of autophagy-related protein Atg8 from the silkworm Bombyx mori · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2F5R5
- Elsewhere: RCSB PDB 3M95 · PDBe 3M95 · UniProt Q2F5R5
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