Research workbench
Structure of tubz-GTP-G-S
Analyse Structure of tubz-GTP-G-S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M89
- Type
- protein
- Length
- 393 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FTSZ/TUBULIN-related protein
- UniProt
- Q8KNP3
- Ligands
- GSP
- Pockets
- 4 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | FTSZ/TUBULIN-related protein | protein | 393 | 45% helix, 19% strand | Q8KNP3 |
Ligands and binding sites
- GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 271 | 0.56 | 0.77 | 34 | empty |
| 2 | 118 | 0.53 | 0.82 | 20 | empty |
| 3 | 140 | 0.48 | 0.78 | 30 | GSP |
| 4 | 53 | 0.28 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KNP3
- Elsewhere: RCSB PDB 3M89 · PDBe 3M89 · UniProt Q8KNP3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.