Research workbench
Crystal structure of B. subtilis ferrochelatase with cobalt bound at the active site
Analyse Crystal structure of B. subtilis ferrochelatase with cobalt bound at the active… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M4Z
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferrochelatase
- EC
- 4.99.1.1
- UniProt
- P32396
- Ligands
- MG, CO, CL
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferrochelatase (EC 4.99.1.1) | protein | 309 | 49% helix, 17% strand | P32396 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A
- CO · Cobalt (II) ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 520 | 0.77 | 0.84 | 61 | CO, MG |
Compared structures
- 3M4Z · Crystal Structure of B. subtilis ferrochelatase with Cobalt bound at the active site · the same entry in another collection · chain A against A, TM-score 1.00
- P32396 · AlphaFold monomer V2.0 prediction for coproporphyrin III ferrochelatase (P32396) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32396
- Elsewhere: RCSB PDB 3M4Z · PDBe 3M4Z · UniProt P32396
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