Research workbench
Structure of a ribosomal methyltransferase
Analyse Structure of a ribosomal methyltransferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M4X
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NOL1/NOP2/SUN family protein
- Pockets
- 3 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NOL1/NOP2/SUN family protein | protein | 440 | 35% helix, 25% strand | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 400 | 0.60 | 0.76 | 44 | empty |
| 2 | 261 | 0.53 | 0.76 | 33 | empty |
| 3 | 99 | 0.44 | 0.79 | 21 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 3M4X · Structure of a ribosomal methyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3M4X · PDBe 3M4X
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