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Crystal structure of putative phosphohydrolase (YP_929327.1) from shewanella amazonensis SB2B at 1.62 a resolution

Analyse Crystal structure of putative phosphohydrolase (YP_929327.1) from shewanella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3M1T
Type: protein
Length: 269 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative phosphohydrolase
UniProt: A1SBA1
Pockets: 4 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative phosphohydrolase	protein	269	71% helix, 0% strand	A1SBA1

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	72	0.47	0.82	19	empty
2	138	0.45	0.76	18	empty
3	120	0.45	0.77	15	empty
4	146	0.39	0.73	27	empty

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3M1T · Crystal structure of Putative phosphohydrolase (YP_929327.1) from Shewanella amazonensis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A1SBA1
Elsewhere: RCSB PDB 3M1T · PDBe 3M1T · UniProt A1SBA1

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