Research workbench
The structure of a putative glutathione S-transferase from corynebacterium glutamicum
Analyse The structure of a putative glutathione S-transferase from corynebacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M1G
- Type
- protein
- Length
- 891 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative glutathione S-transferase
- EC
- 2.5.1.18
- UniProt
- Q8NR03
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative glutathione S-transferase (EC 2.5.1.18) | protein | 297 | 42% helix, 9% strand | Q8NR03 |
| C | Putative glutathione S-transferase (EC 2.5.1.18) | protein | 297 | 42% helix, 9% strand | Q8NR03 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.77 | 0.97 | 24 | empty |
| 2 | 419 | 0.66 | 0.79 | 45 | GOL |
| 3 | 55 | 0.28 | 0.74 | 15 | empty |
Interfaces
2 interfaces between chains.
- B–C · 1116 Ų buried · 17 hydrogen bonds · protein-protein
- A–C · 485 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3M1G · The structure of a putative glutathione S-transferase from Corynebacterium glutamicum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NR03
- Elsewhere: RCSB PDB 3M1G · PDBe 3M1G · UniProt Q8NR03
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