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Crystal structure of variable lymphocyte receptor VLRA.R5.1

Analyse Crystal structure of variable lymphocyte receptor VLRA.R5.1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3M19
Type: protein
Length: 474 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Variable lymphocyte receptor a diversity region
UniProt: C7B6Z3
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Variable lymphocyte receptor a diversity region	protein	237	11% helix, 14% strand	C7B6Z3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	406	0.68	0.81	83	empty

Interfaces

1 interface between chains.

A–B · 802 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

3M19 · Crystal structure of variable lymphocyte receptor VLRA.R5.1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7B6Z3
Elsewhere: RCSB PDB 3M19 · PDBe 3M19 · UniProt C7B6Z3

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