Research workbench
1.4 ångström resolution crystal structure of putative alpha amylase from salmonella typhimurium.
Analyse 1.4 ångström resolution crystal structure of putative alpha amylase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M07
- Type
- protein
- Length
- 584 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative alpha amylase
- UniProt
- Q8ZPF0
- Ligands
- MG, CL
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative alpha amylase | protein | 584 | 31% helix, 23% strand | Q8ZPF0 |
Ligands and binding sites
- MG · Magnesium ion · metal · 6 copies · chains A
- CL · Chloride ion · ion · 4 copies · chains A
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A
- BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 700 | 0.70 | 0.77 | 63 | MG, CL, BTB |
| 2 | 187 | 0.53 | 0.79 | 30 | MG, CL |
Compared structures
- 3M07 · 1.4 Angstrom Resolution Crystal Structure of Putative alpha Amylase from Salmonella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZPF0
- Elsewhere: RCSB PDB 3M07 · PDBe 3M07 · UniProt Q8ZPF0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.