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Crystal structure of HP0420-homologue from helicobacter felis

Analyse Crystal structure of HP0420-homologue from helicobacter felis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LW3
Type: protein
Length: 258 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HP0420 homologue
Pockets: 2 · best druggability 0.66

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	HP0420 homologue	protein	121	18% helix, 49% strand	—
B	HP0420 homologue	protein	137	19% helix, 43% strand	—

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	67	0.66	0.93	23	empty
2	58	0.62	0.92	21	empty

Interfaces

1 interface between chains.

A–B · 1547 Å² buried · 27 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3LW3 · Crystal structure of HP0420-homologue from Helicobacter felis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3LW3 · PDBe 3LW3

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