Research workbench
Crystal structure of extragenic suppressor protein suhb from bartonella henselae, native
Analyse Crystal structure of extragenic suppressor protein suhb from bartonella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LV0
- Type
- protein
- Length
- 512 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extragenic suppressor protein suhb
- UniProt
- Q6G1Z6
- Ligands
- MG
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extragenic suppressor protein suhb | protein | 258 | 38% helix, 28% strand | Q6G1Z6 |
| B | Extragenic suppressor protein suhb | protein | 254 | 38% helix, 29% strand | Q6G1Z6 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 358 | 0.71 | 0.84 | 40 | empty |
| 2 | 336 | 0.69 | 0.83 | 39 | MG |
| 3 | 249 | 0.49 | 0.74 | 28 | empty |
| 4 | 58 | 0.36 | 0.78 | 13 | empty |
| 5 | 54 | 0.30 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1711 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 3LV0 · Crystal structure of extragenic suppressor protein suhB from Bartonella henselae, native · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6G1Z6
- Elsewhere: RCSB PDB 3LV0 · PDBe 3LV0 · UniProt Q6G1Z6
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