Research workbench

Crystal structure of cyanobacterial psbq from synechocystis sp. pcc 6803 complexed with ZN2+

Analyse Crystal structure of cyanobacterial psbq from synechocystis sp. pcc 6803… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LS1
Type: protein
Length: 266 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SLL1638 protein
UniProt: P73048
Ligands: ZN
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	SLL1638 protein	protein	133	73% helix, 0% strand	P73048

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.36	0.74	19	empty
2	54	0.28	0.75	12	empty

Interfaces

1 interface between chains.

A–B · 462 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

3LS1 · Crystal Structure of Cyanobacterial PsbQ from Synechocystis sp. PCC 6803 complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73048
Elsewhere: RCSB PDB 3LS1 · PDBe 3LS1 · UniProt P73048

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.