Research workbench
Crystal structure of the hatching enzyme ZHE1 from the zebrafish danio rerio
Analyse Crystal structure of the hatching enzyme ZHE1 from the zebrafish danio rerio in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LQB
- Type
- protein
- Length
- 198 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LOC792177 protein
- UniProt
- Q1LW01
- Ligands
- ZN, SO4
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LOC792177 protein | protein | 198 | 27% helix, 19% strand | Q1LW01 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.33 | 0.72 | 22 | SO4 |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 3LQB · Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio · the same entry in another collection · chain A against A, TM-score 1.00
- Q1LW01 · AlphaFold monomer V2.0 prediction for hatching enzyme 1.2 (Q1LW01) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1LW01
- Elsewhere: RCSB PDB 3LQB · PDBe 3LQB · UniProt Q1LW01
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