Research workbench
Crystal structure of domain of unknown function DUF59 from bacillus anthracis
Analyse Crystal structure of domain of unknown function DUF59 from bacillus anthracis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LNO
- Type
- protein
- Length
- 639 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein
- UniProt
- Q81XF6
- Pockets
- 8 · best druggability 0.69
Structure
x-ray diffraction · 4 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Putative uncharacterized protein | protein | 106 | 45% helix, 19% strand | Q81XF6 |
| B | Putative uncharacterized protein | protein | 107 | 45% helix, 19% strand | Q81XF6 |
| D, E | Putative uncharacterized protein | protein | 107 | 46% helix, 19% strand | Q81XF6 |
| F | Putative uncharacterized protein | protein | 106 | 44% helix, 19% strand | Q81XF6 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.69 | 0.89 | 26 | empty |
| 2 | 112 | 0.66 | 0.90 | 23 | empty |
| 3 | 111 | 0.65 | 0.89 | 21 | empty |
| 4 | 145 | 0.65 | 0.87 | 24 | empty |
| 5 | 126 | 0.38 | 0.74 | 23 | empty |
Interfaces
7 interfaces between chains.
- B–E · 799 Ų buried · 12 hydrogen bonds · protein-protein
- A–D · 771 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 758 Ų buried · 11 hydrogen bonds · protein-protein
- E–F · 723 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 455 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 36 modified (engineered).
Compared structures
- 3LNO · Crystal Structure of Domain of Unknown Function DUF59 from Bacillus anthracis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81XF6
- Elsewhere: RCSB PDB 3LNO · PDBe 3LNO · UniProt Q81XF6
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