Research workbench
Crystal structure of zneb from cupriavidus metallidurans
Analyse Crystal structure of zneb from cupriavidus metallidurans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LNN
- Type
- protein
- Length
- 586 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane fusion protein (mfp) heavy metal cation efflux zneb (czcb-like)
- UniProt
- Q1LCD7
- Ligands
- ZN
- Pockets
- 7 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane fusion protein (mfp) heavy metal cation efflux zneb (czcb-like) | protein | 341 | 20% helix, 35% strand | Q1LCD7 |
| B | Membrane fusion protein (mfp) heavy metal cation efflux zneb (czcb-like) | protein | 245 | 25% helix, 29% strand | Q1LCD7 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.54 | 0.77 | 33 | empty |
| 2 | 51 | 0.44 | 0.84 | 16 | empty |
| 3 | 152 | 0.43 | 0.75 | 24 | empty |
| 4 | 104 | 0.36 | 0.74 | 18 | empty |
| 5 | 102 | 0.34 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1506 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 3LNN · Crystal structure of ZneB from Cupriavidus metallidurans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1LCD7
- Elsewhere: RCSB PDB 3LNN · PDBe 3LNN · UniProt Q1LCD7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.