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Crystal structure of putative geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum

Analyse Crystal structure of putative geranylgeranyl pyrophosphate synthase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LK5
Type: protein
Length: 333 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Geranylgeranyl pyrophosphate synthase
EC: 2.5.1.1
UniProt: Q8NNM1
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Geranylgeranyl pyrophosphate synthase (EC 2.5.1.1)	protein	333	79% helix, 0% strand	Q8NNM1

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	616	0.70	0.78	56	GOL
2	75	0.43	0.80	14	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3LK5 · Crystal structure of putative Geranylgeranyl pyrophosphate synthase from Corynebacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NNM1
Elsewhere: RCSB PDB 3LK5 · PDBe 3LK5 · UniProt Q8NNM1

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