Research workbench
Crystal structure of E.COLI ybcl, a new member of the mammalian pebp family
Analyse Crystal structure of E.COLI ybcl, a new member of the mammalian pebp family in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1FUX
- Type
- protein
- Length
- 329 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical 19.5 kda protein in emre-rus intergenic region
- UniProt
- P77368
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical 19.5 kda protein in emre-rus intergenic region | protein | 165 | 7% helix, 33% strand | P77368 |
| B | Hypothetical 19.5 kda protein in emre-rus intergenic region | protein | 164 | 9% helix, 34% strand | P77368 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.56 | 0.85 | 21 | empty |
| 2 | 68 | 0.52 | 0.86 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 838 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide, 2 modified (disulfide, engineered).
Compared structures
- 1FUX · Crystal structure of E.COLI ybcl, a new member of the mammalian pebp family · the same entry in another collection · chain A against A, TM-score 1.00
- P77368 · AlphaFold monomer V2.0 prediction for UPF0098 protein ybcl (P77368) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77368
- Elsewhere: RCSB PDB 1FUX · PDBe 1FUX · UniProt P77368
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