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Crystal structure of inorganic phosphatase from anaplasma phagocytophilum at 1.75A resolution

Analyse Crystal structure of inorganic phosphatase from anaplasma phagocytophilum at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LD3
Type: protein
Length: 342 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Inorganic pyrophosphatase
EC: 3.6.1.1
UniProt: Q2GJ02
Ligands: PO4
Pockets: 4 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Inorganic pyrophosphatase (EC 3.6.1.1)	protein	171	20% helix, 33% strand	Q2GJ02

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	162	0.48	0.77	27	PO4
2	129	0.42	0.75	25	empty
3	110	0.41	0.77	24	PO4
4	82	0.32	0.73	21	empty

Interfaces

1 interface between chains.

A–B · 709 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

3LD3 · Crystal structure of inorganic phosphatase from anaplasma phagocytophilum at 1.75a… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2GJ02
Elsewhere: RCSB PDB 3LD3 · PDBe 3LD3 · UniProt Q2GJ02

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