Research workbench
Crystal structure of ibv NSP2A
Analyse Crystal structure of ibv NSP2A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LD1
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Replicase polyprotein 1A
- EC
- 3.4.22.-
- UniProt
- P0C6V5
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replicase polyprotein 1A (EC 3.4.22.-) | protein | 359 | 40% helix, 26% strand | P0C6V5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.73 | 0.97 | 16 | empty |
| 2 | 73 | 0.42 | 0.79 | 14 | empty |
| 3 | 134 | 0.40 | 0.74 | 22 | empty |
| 4 | 55 | 0.27 | 0.73 | 14 | empty |
Compared structures
- 3LD1 · Crystal Structure of IBV Nsp2a · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C6V5
- Elsewhere: RCSB PDB 3LD1 · PDBe 3LD1 · UniProt P0C6V5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.