Research workbench
The crystal structure of SMU.793 from streptococcus mutans UA159
Analyse The crystal structure of SMU.793 from streptococcus mutans UA159 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LBB
- Type
- protein
- Length
- 248 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein SMU.793
- UniProt
- Q8DUV0
- Ligands
- SO4, CL
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative uncharacterized protein SMU.793 | protein | 124 | 17% helix, 53% strand | Q8DUV0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.68 | 0.85 | 28 | empty |
| 2 | 151 | 0.67 | 0.88 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1540 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 3LBB · The Crystal Structure of smu.793 from Streptococcus mutans UA159 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DUV0
- Elsewhere: RCSB PDB 3LBB · PDBe 3LBB · UniProt Q8DUV0
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