Research workbench
The crystal structure of SMU.1229 from streptococcus mutans UA159 bound to hypoxanthine
Analyse The crystal structure of SMU.1229 from streptococcus mutans UA159 bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LBA
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative purine nucleoside phosphorylase
- EC
- 2.4.2.1
- UniProt
- Q8DTU4
- Ligands
- HPA, SO4
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative purine nucleoside phosphorylase (EC 2.4.2.1) | protein | 260 | 35% helix, 26% strand | Q8DTU4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.51 | 0.79 | 30 | HPA, SO4 |
| 2 | 57 | 0.42 | 0.82 | 18 | empty |
Compared structures
- 3LBA · The Crystal Structure of smu.1229 from Streptococcus mutans UA159 bound to hypoxanthine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DTU4
- Elsewhere: RCSB PDB 3LBA · PDBe 3LBA · UniProt Q8DTU4
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