Research workbench
The crystal structure of SMU.1229 from streptococcus mutans UA159
Analyse The crystal structure of SMU.1229 from streptococcus mutans UA159 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LA8
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative purine nucleoside phosphorylase
- EC
- 2.4.2.1
- UniProt
- Q8DTU4
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative purine nucleoside phosphorylase (EC 2.4.2.1) | protein | 247 | 38% helix, 26% strand | Q8DTU4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 146 | 0.49 | 0.78 | 30 | SO4 |
| 2 | 57 | 0.38 | 0.79 | 19 | empty |
Compared structures
- 3LA8 · The Crystal Structure of smu.1229 from Streptococcus mutans UA159 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DTU4
- Elsewhere: RCSB PDB 3LA8 · PDBe 3LA8 · UniProt Q8DTU4
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