Research workbench
The crystal structure of SMU.1604C from streptococcus mutans UA159
Analyse The crystal structure of SMU.1604C from streptococcus mutans UA159 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L9F
- Type
- protein
- Length
- 680 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein SMU.1604C
- UniProt
- Q8DSZ7
- Ligands
- MG
- Pockets
- 10 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative uncharacterized protein SMU.1604C | protein | 170 | 61% helix, 11% strand | Q8DSZ7 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 548 | 0.63 | 0.75 | 52 | empty |
| 2 | 226 | 0.55 | 0.78 | 28 | empty |
| 3 | 172 | 0.53 | 0.78 | 20 | empty |
| 4 | 139 | 0.52 | 0.80 | 19 | empty |
| 5 | 94 | 0.48 | 0.81 | 23 | empty |
Interfaces
3 interfaces between chains.
- B–C · 3133 Ų buried · 42 hydrogen bonds · protein-protein
- A–D · 3114 Ų buried · 42 hydrogen bonds · protein-protein
- B–D · 152 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3L9F · The Crystal Structure of smu.1604c from Streptococcus mutans UA159 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DSZ7
- Elsewhere: RCSB PDB 3L9F · PDBe 3L9F · UniProt Q8DSZ7
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