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The crystal structure of SMU.1046C from streptococcus mutans UA159

Analyse The crystal structure of SMU.1046C from streptococcus mutans UA159 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3L9D
Type: protein
Length: 391 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative GTP pyrophosphokinase
EC: 2.7.6.5
UniProt: Q8DU97
Pockets: 4 · best druggability 0.55

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative GTP pyrophosphokinase (EC 2.7.6.5)	protein	198	52% helix, 23% strand	Q8DU97
B	Putative GTP pyrophosphokinase (EC 2.7.6.5)	protein	193	47% helix, 24% strand	Q8DU97

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	319	0.55	0.75	30	empty
2	243	0.49	0.74	33	empty
3	126	0.46	0.78	25	empty
4	123	0.44	0.77	27	empty

Interfaces

1 interface between chains.

A–B · 440 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

3L9D · The Crystal Structure of smu.1046c from Streptococcus mutans UA159 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DU97
Elsewhere: RCSB PDB 3L9D · PDBe 3L9D · UniProt Q8DU97

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