Research workbench
Crystal structure of aldr from streptococcus mutans
Analyse Crystal structure of aldr from streptococcus mutans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L7Q
- Type
- protein
- Length
- 1,116 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative translation initiation inhibitor, aldr regulator- like protein
- UniProt
- Q8DTM5
- Pockets
- 15 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I | Putative translation initiation inhibitor, aldr regulator- like protein | protein | 124 | 30% helix, 31% strand | Q8DTM5 |
Pockets
15 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 760 | 0.84 | 0.87 | 79 | empty |
| 2 | 798 | 0.83 | 0.86 | 65 | empty |
| 3 | 106 | 0.78 | 0.98 | 24 | empty |
| 4 | 101 | 0.77 | 0.98 | 26 | empty |
| 5 | 93 | 0.76 | 0.97 | 25 | empty |
Interfaces
17 interfaces between chains.
- G–I · 983 Ų buried · 10 hydrogen bonds · protein-protein
- H–I · 970 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 968 Ų buried · 16 hydrogen bonds · protein-protein
- E–F · 965 Ų buried · 11 hydrogen bonds · protein-protein
- G–H · 964 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 3L7Q · Crystal structure of AldR from streptococcus mutans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DTM5
- Elsewhere: RCSB PDB 3L7Q · PDBe 3L7Q · UniProt Q8DTM5
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