Research workbench
Crystal structure of SMU.1657C, putative nitrogen regulatory protein pii from streptococcus mutans
Analyse Crystal structure of SMU.1657C, putative nitrogen regulatory protein pii from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L7P
- Type
- protein
- Length
- 525 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative nitrogen regulatory protein pii
- UniProt
- Q8DSV2
- Pockets
- 5 · best druggability 0.85
Structure
x-ray diffraction · 6 distinct chains · 36% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative nitrogen regulatory protein pii | protein | 83 | 39% helix, 46% strand | Q8DSV2 |
| B | Putative nitrogen regulatory protein pii | protein | 88 | 36% helix, 43% strand | Q8DSV2 |
| C | Putative nitrogen regulatory protein pii | protein | 91 | 35% helix, 48% strand | Q8DSV2 |
| D | Putative nitrogen regulatory protein pii | protein | 90 | 34% helix, 49% strand | Q8DSV2 |
| E | Putative nitrogen regulatory protein pii | protein | 85 | 38% helix, 52% strand | Q8DSV2 |
| F | Putative nitrogen regulatory protein pii | protein | 88 | 36% helix, 47% strand | Q8DSV2 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 370 | 0.85 | 0.94 | 49 | empty |
| 2 | 494 | 0.66 | 0.78 | 76 | empty |
| 3 | 365 | 0.60 | 0.77 | 72 | empty |
| 4 | 214 | 0.57 | 0.79 | 40 | empty |
| 5 | 128 | 0.52 | 0.81 | 26 | empty |
Interfaces
12 interfaces between chains.
- C–D · 1050 Ų buried · 13 hydrogen bonds · protein-protein
- B–F · 991 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 991 Ų buried · 11 hydrogen bonds · protein-protein
- A–D · 980 Ų buried · 10 hydrogen bonds · protein-protein
- E–F · 973 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3L7P · Crystal structure of SMU.1657c, Putative nitrogen regulatory protein PII from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DSV2
- Elsewhere: RCSB PDB 3L7P · PDBe 3L7P · UniProt Q8DSV2
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