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Crystal structure of the xanthomonas campestris gyrase a C-terminal domain

Analyse Crystal structure of the xanthomonas campestris gyrase a C-terminal domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3L6V
Type: protein
Length: 618 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA gyrase subunit a
EC: 5.99.1.3
UniProt: Q8PAB1
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 9% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA gyrase subunit a (EC 5.99.1.3)	protein	313	8% helix, 42% strand	Q8PAB1
B	DNA gyrase subunit a (EC 5.99.1.3)	protein	305	9% helix, 41% strand	Q8PAB1

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	936	0.71	0.76	72	empty
2	853	0.71	0.76	63	empty
3	363	0.62	0.78	41	empty
4	103	0.40	0.77	21	empty
5	123	0.38	0.74	23	empty

Interfaces

1 interface between chains.

A–B · 616 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

3L6V · Crystal Structure of the Xanthomonas campestris Gyrase A C-terminal Domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PAB1
Elsewhere: RCSB PDB 3L6V · PDBe 3L6V · UniProt Q8PAB1

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