Research workbench
Crystal structure of the uncharacterized lipoprotein yceb from E. COLI at the resolution 2.0A. northeast structural genomics consortium target ER542
Analyse Crystal structure of the uncharacterized lipoprotein yceb from E. COLI at the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L6I
- Type
- protein
- Length
- 343 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized lipoprotein yceb
- UniProt
- P0AB26
- Ligands
- NA
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized lipoprotein yceb | protein | 171 | 25% helix, 47% strand | P0AB26 |
| B | Uncharacterized lipoprotein yceb | protein | 172 | 27% helix, 48% strand | P0AB26 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.32 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 630 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3L6I · Crystal structure of the uncharacterized lipoprotein yceb from e. coli at the resolution… · the same entry in another collection · chain A against A, TM-score 1.00
- P0AB26 · AlphaFold monomer V2.0 prediction for uncharacterized lipoprotein yceb (P0AB26) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AB26
- Elsewhere: RCSB PDB 3L6I · PDBe 3L6I · UniProt P0AB26
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