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Crystal structure of an anopheles gambiae odorant-binding protein AGAMOBP22A with bound odorant benzaldehyde

Analyse Crystal structure of an anopheles gambiae odorant-binding protein AGAMOBP22A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3L4L
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Odorant binding protein (AGAP010409-pa)
UniProt: Q7PGA3
Ligands: HBX, NH4
Pockets: 1 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 60% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Odorant binding protein (AGAP010409-pa)	protein	119	60% helix, 5% strand	Q7PGA3

Ligands and binding sites

HBX · benzaldehyde · ligand · chains A
NH4 · Ammonium ion · ion · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.67	0.85	24	HBX

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

3L4L · Crystal Structure of an Anopheles gambiae Odorant-binding Protein AgamOBP22a with Bound… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7PGA3
Elsewhere: RCSB PDB 3L4L · PDBe 3L4L · UniProt Q7PGA3

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