Research workbench
Crystal structure of bacillus anthracis heml-1, glutamate semialdehyde aminotransferase
Analyse Crystal structure of bacillus anthracis heml-1, glutamate semialdehyde… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L44
- Type
- protein
- Length
- 859 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate-1-semialdehyde 2,1-aminomutase 1
- EC
- 5.4.3.8
- UniProt
- Q81YV0
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate-1-semialdehyde 2,1-aminomutase 1 (EC 5.4.3.8) | protein | 426 | 44% helix, 17% strand | Q81YV0 |
| B | Glutamate-1-semialdehyde 2,1-aminomutase 1 (EC 5.4.3.8) | protein | 433 | 43% helix, 17% strand | Q81YV0 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.77 | 0.99 | 20 | empty |
| 2 | 465 | 0.69 | 0.80 | 49 | empty |
| 3 | 446 | 0.69 | 0.80 | 48 | empty |
| 4 | 98 | 0.40 | 0.77 | 20 | empty |
| 5 | 65 | 0.34 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 4538 Ų buried · 65 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 25 modified (engineered, cofactor).
Compared structures
- 3L44 · Crystal structure of Bacillus anthracis HemL-1, glutamate semialdehyde aminotransferase · the same entry in another collection · chain A against A, TM-score 1.00
- Q81YV0 · AlphaFold monomer V2.0 prediction for glutamate-1-semialdehyde 2,1-aminomutase 1 (Q81YV0) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81YV0
- Elsewhere: RCSB PDB 3L44 · PDBe 3L44 · UniProt Q81YV0
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