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Crystal structure of putative exonuclease (RER070207002219) from eubacterium rectale at 2.19 a resolution
Analyse Crystal structure of putative exonuclease (RER070207002219) from eubacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L0A
- Type
- protein
- Length
- 266 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative exonuclease
- UniProt
- C4ZCC6
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative exonuclease | protein | 266 | 45% helix, 20% strand | C4ZCC6 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
- PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 989 | 0.75 | 0.77 | 76 | TRS |
| 2 | 121 | 0.42 | 0.75 | 20 | empty |
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 3L0A · Crystal structure of Putative exonuclease (RER070207002219) from Eubacterium rectale at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4ZCC6
- Elsewhere: RCSB PDB 3L0A · PDBe 3L0A · UniProt C4ZCC6
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