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The crystal structure of a cytoplasmic protein with unknown function from saccharomyces cerevisiae

Analyse The crystal structure of a cytoplasmic protein with unknown function from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KZV
Type: protein
Length: 249 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized oxidoreductase YIR035C
EC: 1.-.-.-
UniProt: P40579
Pockets: 2 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized oxidoreductase YIR035C (EC 1.-.-.-)	protein	249	50% helix, 14% strand	P40579

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	192	0.71	0.88	41	GOL
2	55	0.35	0.78	15	empty

Compared structures

3KZV · The crystal structure of a cytoplasmic protein with unknown function from Saccharomyces… · the same entry in another collection · chain A against A, TM-score 1.00
P40579 · AlphaFold monomer V2.0 prediction for uncharacterized oxidoreductase YIR035C (P40579) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P40579
Elsewhere: RCSB PDB 3KZV · PDBe 3KZV · UniProt P40579

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