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Crystal structure of T-cell lymphoma invasion and metastasis-1 PDZ in complex with ssrkeyya peptide
Analyse Crystal structure of T-cell lymphoma invasion and metastasis-1 PDZ in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KZE
- Type
- protein
- Length
- 286 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T-lymphoma invasion and metastasis-inducing protein 1; Synthetic peptide
- UniProt
- Q13009
Structure
x-ray diffraction · 4 distinct chains · 16% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | T-lymphoma invasion and metastasis-inducing protein 1 | protein | 93 | 15% helix, 43% strand | Q13009 |
| C | T-lymphoma invasion and metastasis-inducing protein 1 | protein | 87 | 20% helix, 41% strand | Q13009 |
| D | Synthetic peptide | protein | 7 | 0% helix, 71% strand | — |
| E | Synthetic peptide | protein | 6 | 0% helix, 33% strand | — |
Interfaces
5 interfaces between chains.
- A–B · 701 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 608 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 520 Ų buried · 16 hydrogen bonds · protein-protein
- C–E · 482 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 124 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3KZE · Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in Complex With… · the same entry in another collection · chain B against B, TM-score 1.00
- Q13009 · AlphaFold monomer V2.0 prediction for T-lymphoma invasion and metastasis-inducing protein… · a predicted model of the same protein · chain C against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13009
- Elsewhere: RCSB PDB 3KZE · PDBe 3KZE · UniProt Q13009
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