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2.35 ångström resolution crystal structure of a putative tRNA (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus subsp. aureus MRSA252

Analyse 2.35 ångström resolution crystal structure of a putative tRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KY7
Type: protein
Length: 229 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA (guanine-N(1)-)-methyltransferase
EC: 2.1.1.31
UniProt: Q6GHJ5
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)	protein	229	42% helix, 18% strand	Q6GHJ5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.34	0.76	15	empty

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

3KY7 · 2.35 Angstrom resolution crystal structure of a putative tRNA… · the same entry in another collection · chain A against A, TM-score 1.00
Q6GHJ5 · AlphaFold monomer V2.0 prediction for tRNA (guanine-N(1)-)-methyltransferase (Q6GHJ5) · a predicted model of the same protein · chain A against A, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6GHJ5
Elsewhere: RCSB PDB 3KY7 · PDBe 3KY7 · UniProt Q6GHJ5

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