Research workbench
Crystal structure of a putative 2-keto-3-deoxygluconate kinase from enterococcus faecalis
Analyse Crystal structure of a putative 2-keto-3-deoxygluconate kinase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3KTN
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbohydrate kinase, pfkb family
- EC
- 2.7.1.45
- UniProt
- Q837J7
- Ligands
- MG, SO4
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbohydrate kinase, pfkb family (EC 2.7.1.45) | protein | 340 | 39% helix, 21% strand | Q837J7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 735 | 0.75 | 0.80 | 70 | SO4 |
| 2 | 108 | 0.43 | 0.77 | 22 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 3KTN · Crystal Structure of a putative 2-Keto-3-deoxygluconate Kinase from Enterococcus faecalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q837J7
- Elsewhere: RCSB PDB 3KTN · PDBe 3KTN · UniProt Q837J7
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