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Crystal structure of short-chain dehydrogenase from oenococcus oeni psu-1

Analyse Crystal structure of short-chain dehydrogenase from oenococcus oeni psu-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KSU
Type: protein
Length: 457 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3-oxoacyl-acyl carrier protein reductase
UniProt: Q04HJ2
Pockets: 7 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 42% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	3-oxoacyl-acyl carrier protein reductase	protein	234	42% helix, 19% strand	Q04HJ2
B	3-oxoacyl-acyl carrier protein reductase	protein	223	42% helix, 20% strand	Q04HJ2

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	349	0.80	0.89	64	empty
2	507	0.79	0.86	65	empty
3	94	0.51	0.83	16	empty
4	100	0.51	0.82	21	empty
5	111	0.39	0.75	16	empty

Interfaces

1 interface between chains.

A–B · 1149 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

3KSU · Crystal structure of short-chain dehydrogenase from oenococcus oeni psu-1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04HJ2
Elsewhere: RCSB PDB 3KSU · PDBe 3KSU · UniProt Q04HJ2

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